Citing MASH-FRET

If MASH-FRET or one of its functionalities is useful for your own work, we kindly ask you to cite the corresponding publication(s) listed below.

Simulation

R. Börner, D. Kowerko, M.C.A.S. Hadzic, S.L.B. König, M. Ritter, R.K.O. Sigel, PLoS One 2018, 13, e0195277.

@article{BoernerPlosOne2018,
    author = {Börner, Richard and Kowerko, Danny and Hadzic, Melodie C. A. S. and König, Sebastian L. B. and Ritter, Marc and Sigel, Roland K. O.},
    title = {Simulations of camera-based single-molecule fluorescence experiments},
    journal = {PLOS ONE},
    year = {2018},
    volume = {13},
    number = {4},
    pages = {1-23},
    doi = {10.1371/journal.pone.0195277}}

Trajectory processing, model selection on TDP, transition rates

M.C.A.S. Hadzic, R.K.O. Sigel, R. Börner, DNAzymes - Methods in Molecular Biology, 2022, Humana, New York, NY, 2439, 173-190.

@Inbook{Hadzic2022,
	author="Hadzic, M{\'e}lodie C. A. S. and Sigel, Roland K. O. and B{\"o}rner, Richard",
	editor="Steger, Gerhard and Rosenbach, Hannah and Span, Ingrid",
	title="Single-Molecule Kinetic Studies of Nucleic Acids by F{\"o}rster Resonance Energy Transfer",
	bookTitle="DNAzymes: Methods and Protocols",
	year={2022},
	publisher="Springer US",
	address="New York, NY",
	pages={173-190},
	isbn={978-1-0716-2047-2},
	doi={10.1007/978-1-0716-2047-2_12}}

M.C.A.S. Hadzic, R. Börner, D. Kowerko, S.L.B. König, R.K.O. Sigel, J. Phys. Chem. B 2018, 122, 6134-6147.

@article{HadzicJPCB2018,
    author = {Hadzic, Melodie C. A. S. and Börner, Richard and König, Sebastian L. B. and Kowerko, Danny and Sigel, Roland K. O.},
    title = {Reliable State Identification and State Transition Detection in Fluorescence Intensity-Based Single-Molecule Förster Resonance Energy-Transfer Data},
    journal = {The Journal of Physical Chemistry B},
    year = {2018},
    volume = {122},
    number = {23},
    pages = {6134-6147},
    doi = {10.1021/acs.jpcb.7b12483}}

Bootstrapping

S.L.B König, M.C.A.S. Hadzic, E. Fiorini, R. Börner, D. Kowerko, W. Blanckenhorn, R.K.O. Sigel, Plos One 2013, 8, 1-17.

@article{KoenigPlosOne2013,
    author = {König, Sebastian L. B. AND Hadzic, Mélodie AND Fiorini, Erica AND Börner, Richard AND Kowerko, Danny AND Blanckenhorn, Wolf U. AND Sigel, Roland K. O.},
    title = {BOBA FRET: Bootstrap-Based Analysis of Single-Molecule FRET Data},
    journal = {PLOS ONE},
    year = {2013},
    volume = {8},
    number = {12},
    pages = {1-17},
    doi = {10.1371/journal.pone.0084157}}

Molecule localization

M.C.A.S. Hadzic, D. Kowerko, R. Börner, S. Zelger-Paulus, R.K.O. Sigel, Proc. SPIE 2016, 9711, 971119.

@article{HadzicProcSPIE2016,
    author = {Hadzic, Melodie C. A. S. and Kowerko, Danny and Börner, Richard and Zelger-Paulus, Susann and Sigel, Roland K. O.},
    title = {Detailed analysis of complex single molecule FRET data with the software MASH},
    journal = {Proc. SPIE},
    year = {2016},
    volume = {9711},
    pages = {1-8},
    doi = {10.1117/12.2211191}}