Index _ | A | B | C | D | E | F | G | L | M | N | O | P | R | S | T | V | X _ _assignDensity() (fretraj.grid.Grid3D static method) _assignRho() (fretraj.grid.Grid3D static method) _carve_VdWextraClash() (fretraj.grid.Grid3D static method) _change_model() (in module fretraj.jupyter) _create_volume_topology() (in module fretraj.cloud) _dye_acc_surf() (fretraj.cloud.Volume method) _neighborIdx() (fretraj.grid.Grid3D static method) _on_slider_value_change() (in module fretraj.jupyter) _reweight_cv() (fretraj.cloud.ACV method) _tag_volume() (fretraj.cloud.ACV method) _weight_factor() (fretraj.cloud.ACV static method) _weighted_quantile_1D() (fretraj.cloud.Volume static method) _xyz2idx() (fretraj.grid.Grid3D static method) A ACV (class in fretraj.cloud) acv_subsampling() (in module fretraj.cloud) addWeights() (fretraj.grid.Grid3D method) attach_xyz (fretraj.cloud.Volume property) B block_molecule() (fretraj.grid.Grid3D method) C calc_acv() (fretraj.cloud.Volume method) calc_av() (fretraj.cloud.Volume method) check_labels() (in module fretraj.cloud) connect2pymol() (in module fretraj.jupyter) create_acv_traj() (in module fretraj.cloud) D dataframe (fretraj.cloud.Trajectory property) dijkstra() (fretraj.grid.Grid3D static method) dijkstra_init() (fretraj.grid.Grid3D method) dist_attach() (in module fretraj.fret) dist_mp() (in module fretraj.fret) dists_DA() (in module fretraj.fret) dists_DA_ll() (in module fretraj.fret) E essential_neighbors() (fretraj.grid.Grid3D method) excludeConcentricSpheres() (fretraj.grid.Grid3D method) F FRET (class in fretraj.cloud) FRET_DA() (in module fretraj.fret) fretraj.cloud module fretraj.export module fretraj.fret module fretraj.grid module fretraj.jupyter module from_attachID() (fretraj.cloud.Volume class method) from_frames() (fretraj.cloud.Volume class method) from_volumes() (fretraj.cloud.FRET class method) G grid2pts() (fretraj.cloud.Volume static method) Grid3D (class in fretraj.grid) L labeling_params() (in module fretraj.cloud) load_acv_traj() (in module fretraj.cloud) load_obj() (in module fretraj.cloud) M make_grid() (fretraj.grid.Grid3D static method) mean_dist_DA() (in module fretraj.fret) mean_dist_DA_fromFRET() (in module fretraj.fret) mean_dist_DA_ll() (in module fretraj.fret) mean_FRET_DA() (in module fretraj.fret) mean_FRET_DA_ll() (in module fretraj.fret) mean_pos() (fretraj.cloud.Volume static method) model_slider() (in module fretraj.jupyter) module fretraj.cloud fretraj.export fretraj.fret fretraj.grid fretraj.jupyter mol_xyzr (fretraj.cloud.Volume property) N nglview_multimodel_ACV() (in module fretraj.jupyter) nglview_trajectory() (in module fretraj.jupyter) nglview_trajectory_ACV() (in module fretraj.jupyter) nglview_trajectory_AV() (in module fretraj.jupyter) O open_dx() (in module fretraj.export) P pdb() (in module fretraj.export) pipeline_frames() (in module fretraj.cloud) printProgressBar() (in module fretraj.cloud) R R_DAE_to_Rmp() (in module fretraj.fret) render_view() (in module fretraj.jupyter) reshape_grid() (fretraj.cloud.Volume static method) S save_acv() (fretraj.cloud.Volume method) save_acv_traj() (in module fretraj.cloud) save_fret() (fretraj.cloud.FRET method) save_labels() (in module fretraj.cloud) save_mp() (fretraj.cloud.Volume method) save_mp_traj() (in module fretraj.cloud) save_obj() (in module fretraj.cloud) save_structure_traj() (in module fretraj.cloud) save_traj() (fretraj.cloud.Trajectory method) setAboveTreshold() (fretraj.grid.Grid3D static method) sortedNeighborIdx() (fretraj.grid.Grid3D method) std_dist_DA() (in module fretraj.fret) std_dist_DA_fromFRET() (in module fretraj.fret) std_FRET_DA() (in module fretraj.fret) T Trajectory (class in fretraj.cloud) V values (fretraj.cloud.FRET property) Volume (class in fretraj.cloud) X xyz() (in module fretraj.export)
